Annotation regulatory peak

Annotation regulatory peak

Usage

PeakAnnottation(LinkageObject, Species = "Homo")

Arguments

LinkageObject

An Linkage Object after RegulatoryPeak.

Species

Select the species, Homo or Mus.The default is Homo.

Value

An LinkageObject after the annottation.

Examples

library(linkage)
data("SmallLinkageObject")
gene_list <- c("TSPAN6", "CD99", "KLHL13")
LinkageObject <-
  RegulatoryPeak(
    LinkageObject = SmallLinkageObject,
    gene_list = gene_list,
    genelist_idtype = "external_gene_name"
  )
peakAnno <- PeakAnnottation(LinkageObject, Species = "Homo")
#> 'select()' returned 1:1 mapping between keys and columns
#> 'select()' returned 1:many mapping between keys and columns
#> 'select()' returned 1:1 mapping between keys and columns