Create a Linkage Object
CreateLinkageObject.Rd
Create a Linkage Object
Arguments
- ATAC_count
The chromatin accessibility matrix file is a tab-delimited multi-column data matrix as well, which the first three columns represent chromosome name, start coordinate on the chromosome and end coordinate on the chromosome of the peaks respectively; the remaining columns of the chromatin accessibility matrix file represent normalized or raw chromatin accessibility levels of peaks for each sample.
- RNA_count
The gene expression matrix file is a tab-delimited multi-column data matrix, which the first column represents gene symbols and the following columns represent normalized or raw expression levels of genes for each sample.
- Species
Select the species, Homo or Mus.
- id_type
The RNA_count gene id type. There are ensembl_gene_id, external_gene_name, entrezgene_id types of genetic IDs to choose from.